Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP4CQ96CF2 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP4CQ96CF2 AC067750.1-201ENST00000608826 6545 ntBASIC18.23■□□□□ 0.51
CHMP4CQ96CF2 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 INTS4P2-202ENST00000614726 2019 ntBASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 ARSEP1-201ENST00000420443 635 ntBASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 BRI3BPP1-201ENST00000594224 787 ntBASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AGAP7P-201ENST00000582299 2062 ntBASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AGAP14-201ENST00000624701 2060 ntBASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP4CQ96CF2 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 C1QBPP1-201ENST00000400117 770 ntBASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 AC079776.1-201ENST00000401540 1152 ntBASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 AC007274.1-201ENST00000439805 662 ntBASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 ATP5G2P4-201ENST00000442175 420 ntBASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 TDH-203ENST00000531764 1110 ntBASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP4CQ96CF2 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CHMP4CQ96CF2 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP4CQ96CF2 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP4CQ96CF2 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CHMP4CQ96CF2 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.2■□□□□ 0.5
CHMP4CQ96CF2 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP4CQ96CF2 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP4CQ96CF2 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms