Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.36■□□□□ 0.37
ERCC4Q92889 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
ERCC4Q92889 CETN4P-206ENST00000642099 2168 ntBASIC17.36■□□□□ 0.37
ERCC4Q92889 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 MIR1233-2-201ENST00000408138 82 ntBASIC17.36■□□□□ 0.37
ERCC4Q92889 MIR1233-1-201ENST00000408722 82 ntBASIC17.36■□□□□ 0.37
ERCC4Q92889 RPL13P2-201ENST00000440687 659 ntBASIC17.36■□□□□ 0.37
ERCC4Q92889 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.36■□□□□ 0.37
ERCC4Q92889 SPDYE12P-201ENST00000618416 771 ntBASIC17.36■□□□□ 0.37
ERCC4Q92889 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.36■□□□□ 0.37
ERCC4Q92889 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.36■□□□□ 0.37
ERCC4Q92889 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.36■□□□□ 0.37
ERCC4Q92889 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
ERCC4Q92889 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
ERCC4Q92889 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
ERCC4Q92889 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ERCC4Q92889 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.35■□□□□ 0.37
ERCC4Q92889 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
ERCC4Q92889 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
ERCC4Q92889 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.35■□□□□ 0.37
ERCC4Q92889 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
ERCC4Q92889 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.35■□□□□ 0.37
ERCC4Q92889 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 AL596442.2-201ENST00000610240 980 ntBASIC17.35■□□□□ 0.37
ERCC4Q92889 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 MIR6069-201ENST00000620069 79 ntBASIC17.35■□□□□ 0.37
ERCC4Q92889 AC139530.3-201ENST00000620344 690 ntBASIC17.35■□□□□ 0.37
ERCC4Q92889 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.35■□□□□ 0.37
ERCC4Q92889 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
ERCC4Q92889 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
ERCC4Q92889 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
ERCC4Q92889 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
ERCC4Q92889 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ERCC4Q92889 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC17.34■□□□□ 0.37
ERCC4Q92889 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms