Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB4Q8WW32 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 CLUHP2-201ENST00000426660 1303 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AL136309.1-201ENST00000403917 691 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AL354877.1-201ENST00000424412 413 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AL133466.1-201ENST00000447582 150 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 SPTLC1P5-201ENST00000450718 252 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AC005740.2-201ENST00000511085 419 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AC245884.6-201ENST00000515672 1067 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 MIR3619-201ENST00000579667 83 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AC004466.1-201ENST00000599515 1080 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AP001505.2-201ENST00000616815 443 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 CU633904.3-201ENST00000624042 1029 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AL603764.1-201ENST00000636452 321 ntBASIC15.24■□□□□ 0.03
HMGB4Q8WW32 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB4Q8WW32 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 CHMP1AP1-201ENST00000445563 662 ntBASIC15.23■□□□□ 0.03
HMGB4Q8WW32 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 RN7SL11P-201ENST00000471305 293 ntBASIC15.23■□□□□ 0.03
HMGB4Q8WW32 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 CHMP4BP1-201ENST00000556017 588 ntBASIC15.23■□□□□ 0.03
HMGB4Q8WW32 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB4Q8WW32 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms