Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 MIR1247-201ENST00000408206 136 ntBASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 HSPB1P2-201ENST00000448722 546 ntBASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 HIST2H2BB-201ENST00000449108 381 ntBASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.89■□□□□ 0.61
UBE3BQ7Z3V4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AC079178.1-201ENST00000420915 656 ntBASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AC006033.1-201ENST00000440505 426 ntBASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 CHMP1AP1-201ENST00000445563 662 ntBASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 MIR4683-201ENST00000579659 81 ntBASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AL008638.5-201ENST00000623814 1298 ntBASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AC018735.1-201ENST00000437208 1502 ntBASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 AC009093.2-202ENST00000620513 2079 ntBASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UBE3BQ7Z3V4 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 AC004945.1-201ENST00000416738 983 ntBASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 AC073347.1-201ENST00000421633 2643 ntBASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 CICP6-201ENST00000457191 2729 ntBASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 AP000593.2-201ENST00000542775 1433 ntBASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 MIR3615-201ENST00000581999 87 ntBASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 AC020910.5-201ENST00000623668 1865 ntBASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.87■□□□□ 0.61
UBE3BQ7Z3V4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms