Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AC078875.1-201ENST00000431907 724 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AC130709.1-201ENST00000484779 1212 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 DNM1P51-201ENST00000558149 522 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AC084781.1-201ENST00000613737 656 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 AC136759.1-202ENST00000530858 2194 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 FRMPD2B-201ENST00000431305 1347 ntBASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC88AQ3V6T2 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 RNA5SP359-201ENST00000364838 113 ntBASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 PSMD4P1-201ENST00000433951 1109 ntBASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 AL157407.1-201ENST00000435784 904 ntBASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 AP000845.1-201ENST00000581677 2131 ntBASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC88AQ3V6T2 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 SERF2-209ENST00000409646 559 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AC005041.3-201ENST00000606287 649 ntBASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AC023024.2-201ENST00000623561 1993 ntBASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AC126365.1-201ENST00000578585 1514 ntBASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 HIST2H2BA-201ENST00000412169 381 ntBASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 CASP16P-204ENST00000635032 809 ntBASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 AC136621.1-201ENST00000624017 2304 ntBASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 PPT1-215ENST00000641471 2368 ntBASIC18.22■□□□□ 0.51
CCDC88AQ3V6T2 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms