Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
CCNA1P78396 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCNA1P78396 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNA1P78396 E2F3P2-201ENST00000447755 1422 ntBASIC17.19■□□□□ 0.34
CCNA1P78396 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNA1P78396 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNA1P78396 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCNA1P78396 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCNA1P78396 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNA1P78396 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNA1P78396 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNA1P78396 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNA1P78396 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCNA1P78396 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
CCNA1P78396 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
CCNA1P78396 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNA1P78396 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 AC011840.2-201ENST00000563063 1520 ntBASIC17.18■□□□□ 0.34
CCNA1P78396 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNA1P78396 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CCNA1P78396 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.18■□□□□ 0.34
CCNA1P78396 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 AC020922.3-201ENST00000595064 547 ntBASIC17.18■□□□□ 0.34
CCNA1P78396 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CCNA1P78396 CICP13-201ENST00000422015 2789 ntBASIC17.18■□□□□ 0.34
CCNA1P78396 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CCNA1P78396 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNA1P78396 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNA1P78396 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNA1P78396 AC010491.1-201ENST00000563101 2797 ntBASIC17.17■□□□□ 0.34
CCNA1P78396 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNA1P78396 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
CCNA1P78396 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
CCNA1P78396 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
CCNA1P78396 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC17.17■□□□□ 0.34
CCNA1P78396 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.17■□□□□ 0.34
CCNA1P78396 LDHBP1-201ENST00000455730 1119 ntBASIC17.17■□□□□ 0.34
CCNA1P78396 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNA1P78396 RCC2P8-201ENST00000502779 1035 ntBASIC17.17■□□□□ 0.34
CCNA1P78396 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC17.17■□□□□ 0.34
CCNA1P78396 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CCNA1P78396 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CCNA1P78396 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.17■□□□□ 0.34
CCNA1P78396 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.17■□□□□ 0.34
CCNA1P78396 MIR7845-201ENST00000618396 99 ntBASIC17.17■□□□□ 0.34
CCNA1P78396 INE2-201ENST00000630399 1874 ntBASIC17.17■□□□□ 0.34
CCNA1P78396 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC17.17■□□□□ 0.34
CCNA1P78396 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNA1P78396 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNA1P78396 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.16■□□□□ 0.34
CCNA1P78396 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCNA1P78396 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms