Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
RPL39P62891 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC10.85□□□□□ -0.67
RPL39P62891 AL031595.1-201ENST00000623969 4709 ntBASIC10.85□□□□□ -0.67
RPL39P62891 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC10.85□□□□□ -0.67
RPL39P62891 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
RPL39P62891 CICP20-201ENST00000443330 2801 ntBASIC10.85□□□□□ -0.67
RPL39P62891 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
RPL39P62891 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC10.84□□□□□ -0.67
RPL39P62891 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC10.84□□□□□ -0.67
RPL39P62891 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
RPL39P62891 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
RPL39P62891 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC10.84□□□□□ -0.67
RPL39P62891 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 SMN2-210ENST00000511812 867 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC10.84□□□□□ -0.67
RPL39P62891 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC10.84□□□□□ -0.67
RPL39P62891 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 AP002472.1-201ENST00000577490 586 ntBASIC10.84□□□□□ -0.67
RPL39P62891 AC008267.7-201ENST00000624570 1194 ntBASIC10.84□□□□□ -0.67
RPL39P62891 VPS51-217ENST00000639871 243 ntTSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 MST1P2-201ENST00000457982 2291 ntBASIC10.84□□□□□ -0.67
RPL39P62891 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC10.84□□□□□ -0.67
RPL39P62891 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
RPL39P62891 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 AC015802.1-201ENST00000588104 1449 ntBASIC10.84□□□□□ -0.67
RPL39P62891 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
RPL39P62891 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 AC011474.4-201ENST00000623523 2076 ntBASIC10.83□□□□□ -0.68
RPL39P62891 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC10.83□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms