Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.06□□□□□ -0.16
CDH11P55287 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.06□□□□□ -0.16
CDH11P55287 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.06□□□□□ -0.16
CDH11P55287 AC105021.1-202ENST00000570572 669 ntBASIC14.06□□□□□ -0.16
CDH11P55287 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CDH11P55287 LINC02560-201ENST00000596379 459 ntBASIC14.06□□□□□ -0.16
CDH11P55287 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.06□□□□□ -0.16
CDH11P55287 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH11P55287 AC008761.3-201ENST00000624803 892 ntBASIC14.06□□□□□ -0.16
CDH11P55287 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
CDH11P55287 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH11P55287 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH11P55287 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CDH11P55287 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CDH11P55287 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH11P55287 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH11P55287 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH11P55287 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CDH11P55287 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 AC117489.1-201ENST00000625169 3217 ntBASIC14.05□□□□□ -0.16
CDH11P55287 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.05□□□□□ -0.16
CDH11P55287 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH11P55287 AC136604.1-201ENST00000418535 575 ntBASIC14.05□□□□□ -0.16
CDH11P55287 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.05□□□□□ -0.16
CDH11P55287 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 AC004890.2-204ENST00000481968 304 ntBASIC14.05□□□□□ -0.16
CDH11P55287 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
CDH11P55287 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.05□□□□□ -0.16
CDH11P55287 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
CDH11P55287 RN7SL828P-201ENST00000607615 303 ntBASIC14.05□□□□□ -0.16
CDH11P55287 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.05□□□□□ -0.16
CDH11P55287 AL590560.3-201ENST00000623350 461 ntBASIC14.05□□□□□ -0.16
CDH11P55287 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CDH11P55287 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.05□□□□□ -0.16
CDH11P55287 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CDH11P55287 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH11P55287 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH11P55287 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.05□□□□□ -0.16
CDH11P55287 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CDH11P55287 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CDH11P55287 AC084364.1-201ENST00000551967 1556 ntBASIC14.05□□□□□ -0.16
CDH11P55287 AC022144.1-201ENST00000602255 1580 ntBASIC14.05□□□□□ -0.16
CDH11P55287 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
CDH11P55287 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CDH11P55287 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.04□□□□□ -0.16
CDH11P55287 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms