Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PCDHA3-202ENST00000532566 4594 ntBASIC14.43□□□□□ -0.1
SOX3P41225 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX3P41225 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
SOX3P41225 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SOX3P41225 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
SOX3P41225 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX3P41225 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SOX3P41225 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX3P41225 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 AC013726.1-201ENST00000563747 2285 ntBASIC14.42□□□□□ -0.1
SOX3P41225 AC009090.5-201ENST00000624886 2285 ntBASIC14.42□□□□□ -0.1
SOX3P41225 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 KRT17P7-201ENST00000451704 1104 ntBASIC14.42□□□□□ -0.1
SOX3P41225 INE1-201ENST00000456273 945 ntBASIC14.42□□□□□ -0.1
SOX3P41225 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX3P41225 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
SOX3P41225 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
SOX3P41225 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX3P41225 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX3P41225 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.42□□□□□ -0.1
SOX3P41225 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SOX3P41225 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX3P41225 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX3P41225 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SOX3P41225 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
SOX3P41225 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX3P41225 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX3P41225 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.41□□□□□ -0.1
SOX3P41225 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 AC011495.1-201ENST00000498085 584 ntBASIC14.41□□□□□ -0.1
SOX3P41225 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.41□□□□□ -0.1
SOX3P41225 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SOX3P41225 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX3P41225 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.41□□□□□ -0.1
SOX3P41225 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.41□□□□□ -0.1
SOX3P41225 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms