Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.05■□□□□ 0.16
BDNFP23560 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.05■□□□□ 0.16
BDNFP23560 DUX4L47-201ENST00000566374 394 ntBASIC16.05■□□□□ 0.16
BDNFP23560 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
BDNFP23560 AC006453.4-201ENST00000636949 1252 ntBASIC16.05■□□□□ 0.16
BDNFP23560 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
BDNFP23560 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.05■□□□□ 0.16
BDNFP23560 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BDNFP23560 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
BDNFP23560 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 REXO1L6P-201ENST00000603433 1515 ntBASIC16.04■□□□□ 0.16
BDNFP23560 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.04■□□□□ 0.16
BDNFP23560 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
BDNFP23560 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 AHCYP2-201ENST00000430630 1300 ntBASIC16.04■□□□□ 0.16
BDNFP23560 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.04■□□□□ 0.16
BDNFP23560 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
BDNFP23560 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.04■□□□□ 0.16
BDNFP23560 AC245100.3-201ENST00000441281 285 ntBASIC16.04■□□□□ 0.16
BDNFP23560 YBX1P6-201ENST00000442962 1002 ntBASIC16.04■□□□□ 0.16
BDNFP23560 RNA5SP412-201ENST00000516234 123 ntBASIC16.04■□□□□ 0.16
BDNFP23560 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.04■□□□□ 0.16
BDNFP23560 AC023310.1-201ENST00000554836 735 ntBASIC16.04■□□□□ 0.16
BDNFP23560 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.04■□□□□ 0.16
BDNFP23560 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
BDNFP23560 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
BDNFP23560 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.03■□□□□ 0.16
BDNFP23560 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.03■□□□□ 0.16
BDNFP23560 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.03■□□□□ 0.16
BDNFP23560 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.03■□□□□ 0.16
BDNFP23560 AC004466.1-201ENST00000599515 1080 ntBASIC16.03■□□□□ 0.16
BDNFP23560 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.03■□□□□ 0.16
BDNFP23560 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 AL354989.2-201ENST00000435838 1540 ntBASIC16.03■□□□□ 0.16
BDNFP23560 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.03■□□□□ 0.16
BDNFP23560 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.03■□□□□ 0.16
BDNFP23560 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
BDNFP23560 REXO1L2P-201ENST00000425429 2069 ntBASIC16.03■□□□□ 0.16
BDNFP23560 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms