Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 AL627231.1-201ENST00000394467 1125 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.29□□□□□ -0.12
COL5A1P20908 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 RPL7P35-201ENST00000446943 740 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 CICP12-201ENST00000455801 843 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 AC007718.1-201ENST00000621078 280 ntBASIC14.29□□□□□ -0.12
COL5A1P20908 CMC2-224ENST00000630396 481 ntTSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
COL5A1P20908 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL5A1P20908 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL5A1P20908 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 AC025271.4-201ENST00000621477 1726 ntBASIC14.28□□□□□ -0.12
COL5A1P20908 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 MROH4P-201ENST00000431302 1578 ntBASIC14.28□□□□□ -0.12
COL5A1P20908 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.28□□□□□ -0.12
COL5A1P20908 CHCHD2P9-201ENST00000461726 456 ntBASIC14.28□□□□□ -0.12
COL5A1P20908 RPL18AP3-201ENST00000462885 528 ntBASIC14.28□□□□□ -0.12
COL5A1P20908 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.28□□□□□ -0.12
COL5A1P20908 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 MIR4649-201ENST00000582839 64 ntBASIC14.28□□□□□ -0.12
COL5A1P20908 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 AC144522.1-201ENST00000625111 1658 ntBASIC14.28□□□□□ -0.12
COL5A1P20908 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 AC104640.1-201ENST00000562617 2109 ntBASIC14.28□□□□□ -0.12
COL5A1P20908 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.28□□□□□ -0.12
COL5A1P20908 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL5A1P20908 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.28□□□□□ -0.12
COL5A1P20908 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.27□□□□□ -0.12
COL5A1P20908 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 MIR557-201ENST00000385239 98 ntBASIC14.27□□□□□ -0.12
COL5A1P20908 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.27□□□□□ -0.12
COL5A1P20908 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.27□□□□□ -0.12
COL5A1P20908 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.27□□□□□ -0.12
COL5A1P20908 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL5A1P20908 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.27□□□□□ -0.12
COL5A1P20908 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL5A1P20908 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.27□□□□□ -0.12
COL5A1P20908 AL139384.1-201ENST00000612143 3047 ntBASIC14.27□□□□□ -0.13
COL5A1P20908 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms