Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 AC055876.2-201ENST00000531834 546 ntBASIC14.68□□□□□ -0.06
SEMA3DO95025 AC023310.3-201ENST00000557027 670 ntBASIC14.68□□□□□ -0.06
SEMA3DO95025 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.68□□□□□ -0.06
SEMA3DO95025 AC100756.1-201ENST00000562736 682 ntBASIC14.68□□□□□ -0.06
SEMA3DO95025 AC138749.3-201ENST00000567691 622 ntBASIC14.68□□□□□ -0.06
SEMA3DO95025 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SEMA3DO95025 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.68□□□□□ -0.06
SEMA3DO95025 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.68□□□□□ -0.06
SEMA3DO95025 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.68□□□□□ -0.06
SEMA3DO95025 AC116165.1-201ENST00000611806 668 ntBASIC14.68□□□□□ -0.06
SEMA3DO95025 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SEMA3DO95025 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SEMA3DO95025 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SEMA3DO95025 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.68□□□□□ -0.06
SEMA3DO95025 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.68□□□□□ -0.06
SEMA3DO95025 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SEMA3DO95025 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SEMA3DO95025 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.68□□□□□ -0.06
SEMA3DO95025 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SEMA3DO95025 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 DRD5P1-201ENST00000456605 1438 ntBASIC14.67□□□□□ -0.06
SEMA3DO95025 CICP24-201ENST00000605464 2705 ntBASIC14.67□□□□□ -0.06
SEMA3DO95025 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.67□□□□□ -0.06
SEMA3DO95025 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.67□□□□□ -0.06
SEMA3DO95025 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.67□□□□□ -0.06
SEMA3DO95025 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.67□□□□□ -0.06
SEMA3DO95025 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.67□□□□□ -0.06
SEMA3DO95025 AC026410.3-201ENST00000514280 936 ntBASIC14.67□□□□□ -0.06
SEMA3DO95025 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.67□□□□□ -0.06
SEMA3DO95025 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 AC005089.1-201ENST00000619486 2241 ntBASIC14.67□□□□□ -0.06
SEMA3DO95025 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SEMA3DO95025 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SEMA3DO95025 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SEMA3DO95025 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SEMA3DO95025 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SEMA3DO95025 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SEMA3DO95025 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SEMA3DO95025 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms