Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.59■□□□□ 0.25
RNF40O75150 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.59■□□□□ 0.25
RNF40O75150 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.59■□□□□ 0.25
RNF40O75150 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.59■□□□□ 0.25
RNF40O75150 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.59■□□□□ 0.25
RNF40O75150 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RNF40O75150 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RNF40O75150 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RNF40O75150 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF40O75150 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF40O75150 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF40O75150 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.59■□□□□ 0.25
RNF40O75150 AC005622.1-201ENST00000636801 1703 ntBASIC16.59■□□□□ 0.25
RNF40O75150 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF40O75150 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.59■□□□□ 0.25
RNF40O75150 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
RNF40O75150 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RNF40O75150 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
RNF40O75150 AC140479.7-201ENST00000636301 2332 ntBASIC16.58■□□□□ 0.25
RNF40O75150 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RNF40O75150 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF40O75150 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF40O75150 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RNF40O75150 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF40O75150 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC16.58■□□□□ 0.24
RNF40O75150 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.58■□□□□ 0.24
RNF40O75150 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.58■□□□□ 0.24
RNF40O75150 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.58■□□□□ 0.24
RNF40O75150 AC093724.1-201ENST00000448659 1027 ntBASIC16.58■□□□□ 0.24
RNF40O75150 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.58■□□□□ 0.24
RNF40O75150 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.58■□□□□ 0.24
RNF40O75150 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.58■□□□□ 0.24
RNF40O75150 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.58■□□□□ 0.24
RNF40O75150 AC024267.1-201ENST00000582320 895 ntBASIC16.58■□□□□ 0.24
RNF40O75150 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
RNF40O75150 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.58■□□□□ 0.24
RNF40O75150 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 AC005252.3-201ENST00000623855 2258 ntBASIC16.58■□□□□ 0.24
RNF40O75150 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
RNF40O75150 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RNF40O75150 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 LINC01230-201ENST00000625222 3017 ntBASIC16.58■□□□□ 0.24
RNF40O75150 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF40O75150 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.57■□□□□ 0.24
RNF40O75150 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 OR2I1P-209ENST00000641730 5365 ntBASIC16.57■□□□□ 0.24
RNF40O75150 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
RNF40O75150 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF40O75150 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
RNF40O75150 AL512384.1-201ENST00000406683 331 ntBASIC16.57■□□□□ 0.24
RNF40O75150 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF40O75150 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
RNF40O75150 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF40O75150 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF40O75150 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF40O75150 AC132938.2-201ENST00000579188 680 ntBASIC16.57■□□□□ 0.24
RNF40O75150 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
RNF40O75150 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF40O75150 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RNF40O75150 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.57■□□□□ 0.24
RNF40O75150 AC020765.3-201ENST00000613051 740 ntBASIC16.57■□□□□ 0.24
RNF40O75150 BNIP3P41-202ENST00000616656 861 ntBASIC16.57■□□□□ 0.24
RNF40O75150 AC007431.3-201ENST00000623221 587 ntBASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms