Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.22■□□□□ 0.67
NPHP1O15259 AC091544.8-201ENST00000619490 361 ntBASIC19.22■□□□□ 0.67
NPHP1O15259 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.22■□□□□ 0.67
NPHP1O15259 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
NPHP1O15259 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
NPHP1O15259 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPHP1O15259 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.21■□□□□ 0.67
NPHP1O15259 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC19.21■□□□□ 0.67
NPHP1O15259 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.21■□□□□ 0.67
NPHP1O15259 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC19.21■□□□□ 0.67
NPHP1O15259 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.21■□□□□ 0.67
NPHP1O15259 CYP46A4P-201ENST00000414953 267 ntBASIC19.21■□□□□ 0.67
NPHP1O15259 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.21■□□□□ 0.67
NPHP1O15259 AC021723.1-201ENST00000486306 515 ntBASIC19.21■□□□□ 0.67
NPHP1O15259 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC19.21■□□□□ 0.67
NPHP1O15259 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.21■□□□□ 0.67
NPHP1O15259 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
NPHP1O15259 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.21■□□□□ 0.67
NPHP1O15259 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.21■□□□□ 0.67
NPHP1O15259 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
NPHP1O15259 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
NPHP1O15259 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPHP1O15259 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
NPHP1O15259 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 AC007787.1-201ENST00000588095 1583 ntBASIC19.2■□□□□ 0.66
NPHP1O15259 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NPHP1O15259 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
NPHP1O15259 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 RN7SL769P-201ENST00000469386 295 ntBASIC19.2■□□□□ 0.66
NPHP1O15259 RN7SL11P-201ENST00000471305 293 ntBASIC19.2■□□□□ 0.66
NPHP1O15259 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.2■□□□□ 0.66
NPHP1O15259 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC19.2■□□□□ 0.66
NPHP1O15259 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 AC022188.1-201ENST00000620960 1664 ntBASIC19.2■□□□□ 0.66
NPHP1O15259 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.2■□□□□ 0.66
NPHP1O15259 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.2■□□□□ 0.66
NPHP1O15259 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPHP1O15259 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
NPHP1O15259 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NPHP1O15259 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
NPHP1O15259 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NPHP1O15259 KRT8P14-201ENST00000414254 1442 ntBASIC19.19■□□□□ 0.66
NPHP1O15259 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.19■□□□□ 0.66
NPHP1O15259 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.19■□□□□ 0.66
NPHP1O15259 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
NPHP1O15259 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 AL645937.2-201ENST00000396808 931 ntBASIC19.19■□□□□ 0.66
NPHP1O15259 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.19■□□□□ 0.66
NPHP1O15259 NKAIN1P1-201ENST00000435754 582 ntBASIC19.19■□□□□ 0.66
NPHP1O15259 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 SERPINA13P-202ENST00000478994 924 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms