Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
LIMCH1Q9UPQ0 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 AC093525.8-201ENST00000624099 1342 ntBASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 AC055876.3-201ENST00000431496 288 ntBASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 AC004890.2-204ENST00000481968 304 ntBASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 AC138649.4-201ENST00000612222 287 ntBASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 MYO15B-237ENST00000642007 4893 ntBASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMCH1Q9UPQ0 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 AP001267.2-201ENST00000532619 2086 ntBASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 AL161772.1-201ENST00000610494 4412 ntBASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 HLA-K-203ENST00000430151 1046 ntBASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 AL353779.1-201ENST00000434793 351 ntBASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 AC026410.3-201ENST00000514280 936 ntBASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 AL390754.1-201ENST00000619088 582 ntBASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMCH1Q9UPQ0 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 AC022144.1-201ENST00000602255 1580 ntBASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 METTL21AP1-201ENST00000438852 635 ntBASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 FAM86LP-201ENST00000478302 853 ntBASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 RARRES2P5-201ENST00000564013 466 ntBASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMCH1Q9UPQ0 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms