Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 AL354989.2-201ENST00000435838 1540 ntBASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHMP4AQ9BY43 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHMP4AQ9BY43 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 GSN-206ENST00000394353 2311 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 RPF1-202ENST00000370656 724 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 AC138466.3-201ENST00000619983 221 ntBASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 AL137783.1-201ENST00000623494 1896 ntBASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHMP4AQ9BY43 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 AL583810.1-201ENST00000553344 1045 ntBASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 AC010328.2-201ENST00000597698 1111 ntBASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.38■□□□□ 0.69
CHMP4AQ9BY43 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms