Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AC011447.5-201ENST00000616168 564 ntBASIC21.2■□□□□ 0.98
USP47Q96K76 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP47Q96K76 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP47Q96K76 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP47Q96K76 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC21.19■□□□□ 0.98
USP47Q96K76 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP47Q96K76 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 AC003102.2-201ENST00000589195 1469 ntBASIC21.19■□□□□ 0.98
USP47Q96K76 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
USP47Q96K76 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC21.19■□□□□ 0.98
USP47Q96K76 TPM3P8-201ENST00000330554 643 ntBASIC21.19■□□□□ 0.98
USP47Q96K76 STX1A-203ENST00000395155 783 ntTSL 2 BASIC21.19■□□□□ 0.98
USP47Q96K76 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC21.19■□□□□ 0.98
USP47Q96K76 OLR1-203ENST00000432556 950 ntTSL 2 BASIC21.19■□□□□ 0.98
USP47Q96K76 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC21.19■□□□□ 0.98
USP47Q96K76 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC21.19■□□□□ 0.98
USP47Q96K76 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC21.19■□□□□ 0.98
USP47Q96K76 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 C2orf69P2-201ENST00000562032 1123 ntBASIC21.19■□□□□ 0.98
USP47Q96K76 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC21.19■□□□□ 0.98
USP47Q96K76 AC073413.1-201ENST00000603927 732 ntBASIC21.19■□□□□ 0.98
USP47Q96K76 AC008687.7-202ENST00000637404 953 ntBASIC21.19■□□□□ 0.98
USP47Q96K76 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
USP47Q96K76 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 INE2-201ENST00000630399 1874 ntBASIC21.19■□□□□ 0.98
USP47Q96K76 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP47Q96K76 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
USP47Q96K76 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP47Q96K76 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC21.19■□□□□ 0.98
USP47Q96K76 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
USP47Q96K76 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
USP47Q96K76 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 AL138725.1-201ENST00000407347 1314 ntBASIC21.18■□□□□ 0.98
USP47Q96K76 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC21.18■□□□□ 0.98
USP47Q96K76 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
USP47Q96K76 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
USP47Q96K76 AL354989.2-201ENST00000435838 1540 ntBASIC21.18■□□□□ 0.98
USP47Q96K76 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC21.18■□□□□ 0.98
USP47Q96K76 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 MIR1202-201ENST00000408529 83 ntBASIC21.18■□□□□ 0.98
USP47Q96K76 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC21.18■□□□□ 0.98
USP47Q96K76 CSF2RBP1-201ENST00000447905 391 ntBASIC21.18■□□□□ 0.98
USP47Q96K76 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC21.18■□□□□ 0.98
USP47Q96K76 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
USP47Q96K76 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC21.18■□□□□ 0.98
USP47Q96K76 OR10B1P-201ENST00000601666 907 ntBASIC21.18■□□□□ 0.98
USP47Q96K76 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC21.18■□□□□ 0.98
USP47Q96K76 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP47Q96K76 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
USP47Q96K76 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP47Q96K76 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
USP47Q96K76 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP47Q96K76 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP47Q96K76 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
USP47Q96K76 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
USP47Q96K76 AC009093.2-202ENST00000620513 2079 ntBASIC21.17■□□□□ 0.98
USP47Q96K76 SNX21-203ENST00000372541 771 ntTSL 2 BASIC21.17■□□□□ 0.98
USP47Q96K76 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
USP47Q96K76 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
USP47Q96K76 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC21.17■□□□□ 0.98
USP47Q96K76 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC21.17■□□□□ 0.98
USP47Q96K76 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
USP47Q96K76 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC21.17■□□□□ 0.98
USP47Q96K76 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 MIR4525-201ENST00000580000 75 ntBASIC21.17■□□□□ 0.98
USP47Q96K76 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC21.17■□□□□ 0.98
USP47Q96K76 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
USP47Q96K76 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC21.17■□□□□ 0.98
USP47Q96K76 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms