Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 DFFBP1-201ENST00000433250 979 ntBASIC14.72□□□□□ -0.05
VMP1Q96GC9 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 TPRX2P-201ENST00000535362 881 ntBASIC14.72□□□□□ -0.05
VMP1Q96GC9 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 AC190387.1-201ENST00000551683 408 ntBASIC14.72□□□□□ -0.05
VMP1Q96GC9 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 AL391825.1-201ENST00000457671 1364 ntBASIC14.72□□□□□ -0.05
VMP1Q96GC9 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.72□□□□□ -0.05
VMP1Q96GC9 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AC007541.1-201ENST00000570282 1469 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AL035633.1-201ENST00000406139 838 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AL353779.1-201ENST00000434793 351 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 GNAQP1-201ENST00000444815 1067 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 CRB3P1-201ENST00000449338 276 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 MEIS3P1-201ENST00000495167 958 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AC027307.3-201ENST00000594262 1100 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 LINC01115-203ENST00000606068 577 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AC087481.3-201ENST00000602886 1894 ntBASIC14.71□□□□□ -0.05
VMP1Q96GC9 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VMP1Q96GC9 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms