Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.91■□□□□ 0.46
SMC1BQ8NDV3 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 RN7SKP175-201ENST00000408472 289 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AL807761.2-201ENST00000422849 729 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AQP7P5-201ENST00000428759 1049 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AQP7P4-201ENST00000447083 1042 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AQP7P2-201ENST00000453967 1041 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 CR383656.3-201ENST00000551315 183 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AC021016.3-201ENST00000608367 477 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AC084781.1-201ENST00000613737 656 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AQP7P3-201ENST00000624547 1041 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 KRT18P9-201ENST00000604826 1300 ntBASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMC1BQ8NDV3 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SMC1BQ8NDV3 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SMC1BQ8NDV3 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
SMC1BQ8NDV3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AC011676.5-201ENST00000624864 2660 ntBASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AP005212.2-201ENST00000584979 510 ntBASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AC004466.1-201ENST00000599515 1080 ntBASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AL157813.1-201ENST00000612996 587 ntBASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms