Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 BX539320.1-201ENST00000623759 877 ntBASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 AC097376.2-205ENST00000610159 5334 ntBASIC14.23□□□□□ -0.13
BEST3Q8N1M1 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.23□□□□□ -0.13
BEST3Q8N1M1 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 PRAL-201ENST00000624952 3286 ntBASIC14.23□□□□□ -0.13
BEST3Q8N1M1 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
BEST3Q8N1M1 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AC127383.1-201ENST00000444697 1800 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 OR2I1P-209ENST00000641730 5365 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 C2orf27AP3-201ENST00000434123 579 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 KRT18P25-201ENST00000508931 1278 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AP005019.2-201ENST00000615104 511 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AL354718.3-201ENST00000616414 581 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 MIR6799-201ENST00000620297 69 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 CR382287.1-201ENST00000623954 586 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AC092127.1-201ENST00000567093 3455 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AC073347.1-201ENST00000421633 2643 ntBASIC14.22□□□□□ -0.13
BEST3Q8N1M1 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BEST3Q8N1M1 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AC022532.1-201ENST00000624563 1728 ntBASIC14.21□□□□□ -0.13
BEST3Q8N1M1 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms