Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 AC000095.1-201ENST00000603208 874 ntBASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC144BQ3MJ40 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AL121723.1-201ENST00000445194 1519 ntBASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AC016694.1-201ENST00000434179 700 ntBASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AC106760.1-201ENST00000508690 800 ntBASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 AC244669.2-201ENST00000612320 853 ntBASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 KRT8P44-201ENST00000441609 1350 ntBASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC144BQ3MJ40 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AL133338.1-201ENST00000565695 1517 ntBASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 KRT18P43-201ENST00000469825 1281 ntBASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms