Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
CDH6P55285 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CDH6P55285 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.92■□□□□ 0.14
CDH6P55285 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.92■□□□□ 0.14
CDH6P55285 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CDH6P55285 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
CDH6P55285 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH6P55285 AC007787.1-201ENST00000588095 1583 ntBASIC15.92■□□□□ 0.14
CDH6P55285 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
CDH6P55285 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
CDH6P55285 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.91■□□□□ 0.14
CDH6P55285 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.91■□□□□ 0.14
CDH6P55285 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CDH6P55285 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.91■□□□□ 0.14
CDH6P55285 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 AC093004.1-201ENST00000508850 424 ntBASIC15.91■□□□□ 0.14
CDH6P55285 AC026410.3-201ENST00000514280 936 ntBASIC15.91■□□□□ 0.14
CDH6P55285 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH6P55285 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.91■□□□□ 0.14
CDH6P55285 AC055876.2-201ENST00000531834 546 ntBASIC15.91■□□□□ 0.14
CDH6P55285 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.91■□□□□ 0.14
CDH6P55285 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH6P55285 RRP7BP-205ENST00000566851 833 ntBASIC15.91■□□□□ 0.14
CDH6P55285 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH6P55285 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH6P55285 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CDH6P55285 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
CDH6P55285 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH6P55285 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
CDH6P55285 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH6P55285 AC097376.2-205ENST00000610159 5334 ntBASIC15.9■□□□□ 0.14
CDH6P55285 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.9■□□□□ 0.14
CDH6P55285 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH6P55285 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.9■□□□□ 0.14
CDH6P55285 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 AL157414.3-201ENST00000624276 1954 ntBASIC15.9■□□□□ 0.14
CDH6P55285 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH6P55285 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CDH6P55285 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CDH6P55285 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CDH6P55285 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.9■□□□□ 0.14
CDH6P55285 SPTLC1P1-201ENST00000447199 261 ntBASIC15.9■□□□□ 0.14
CDH6P55285 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 SERBP1P5-201ENST00000510079 1181 ntBASIC15.9■□□□□ 0.14
CDH6P55285 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH6P55285 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.9■□□□□ 0.14
CDH6P55285 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH6P55285 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH6P55285 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH6P55285 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH6P55285 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CDH6P55285 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms