Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL645728.2-202ENST00000641679 227 ntBASIC15□□□□□ -0.01
SHMT2P34897 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SHMT2P34897 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
SHMT2P34897 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SHMT2P34897 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.99□□□□□ -0.01
SHMT2P34897 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.99□□□□□ -0.01
SHMT2P34897 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.99□□□□□ -0.01
SHMT2P34897 AC063926.2-201ENST00000623766 1308 ntBASIC14.99□□□□□ -0.01
SHMT2P34897 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.99□□□□□ -0.01
SHMT2P34897 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.99□□□□□ -0.01
SHMT2P34897 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.99□□□□□ -0.01
SHMT2P34897 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
SHMT2P34897 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.99□□□□□ -0.01
SHMT2P34897 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.99□□□□□ -0.01
SHMT2P34897 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.99□□□□□ -0.01
SHMT2P34897 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 AL035252.4-201ENST00000624174 288 ntBASIC14.99□□□□□ -0.01
SHMT2P34897 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SHMT2P34897 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHMT2P34897 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.99□□□□□ -0.01
SHMT2P34897 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
SHMT2P34897 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
SHMT2P34897 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.98□□□□□ -0.01
SHMT2P34897 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
SHMT2P34897 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 AC063926.3-201ENST00000624734 5658 ntBASIC14.98□□□□□ -0.01
SHMT2P34897 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
SHMT2P34897 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.98□□□□□ -0.01
SHMT2P34897 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.98□□□□□ -0.01
SHMT2P34897 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.98□□□□□ -0.01
SHMT2P34897 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.98□□□□□ -0.01
SHMT2P34897 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.98□□□□□ -0.01
SHMT2P34897 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
SHMT2P34897 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.98□□□□□ -0.01
SHMT2P34897 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.98□□□□□ -0.01
SHMT2P34897 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.98□□□□□ -0.01
SHMT2P34897 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
SHMT2P34897 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHMT2P34897 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.98□□□□□ -0.01
SHMT2P34897 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms