Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.11■□□□□ 0.33
CIITAP33076 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CIITAP33076 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 AC023090.2-201ENST00000625182 2110 ntBASIC17.11■□□□□ 0.33
CIITAP33076 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.11■□□□□ 0.33
CIITAP33076 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CIITAP33076 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CIITAP33076 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 HLA-V-201ENST00000429037 534 ntBASIC17.11■□□□□ 0.33
CIITAP33076 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.11■□□□□ 0.33
CIITAP33076 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.11■□□□□ 0.33
CIITAP33076 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.11■□□□□ 0.33
CIITAP33076 AL008721.1-201ENST00000609964 604 ntBASIC17.11■□□□□ 0.33
CIITAP33076 AC138466.3-201ENST00000619983 221 ntBASIC17.11■□□□□ 0.33
CIITAP33076 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CIITAP33076 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CIITAP33076 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
CIITAP33076 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CIITAP33076 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.11■□□□□ 0.33
CIITAP33076 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.1■□□□□ 0.33
CIITAP33076 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CIITAP33076 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CIITAP33076 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CIITAP33076 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.1■□□□□ 0.33
CIITAP33076 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CIITAP33076 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.1■□□□□ 0.33
CIITAP33076 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.1■□□□□ 0.33
CIITAP33076 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.1■□□□□ 0.33
CIITAP33076 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.1■□□□□ 0.33
CIITAP33076 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.1■□□□□ 0.33
CIITAP33076 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.1■□□□□ 0.33
CIITAP33076 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CIITAP33076 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.1■□□□□ 0.33
CIITAP33076 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CIITAP33076 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.1■□□□□ 0.33
CIITAP33076 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms