Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN4P29074 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
PTPN4P29074 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN4P29074 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN4P29074 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.42■□□□□ 0.06
PTPN4P29074 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 RN7SL828P-201ENST00000607615 303 ntBASIC15.42■□□□□ 0.06
PTPN4P29074 AL589739.1-201ENST00000607720 493 ntBASIC15.42■□□□□ 0.06
PTPN4P29074 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 AL358472.5-202ENST00000641448 1267 ntBASIC15.42■□□□□ 0.06
PTPN4P29074 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.42■□□□□ 0.06
PTPN4P29074 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
PTPN4P29074 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.42■□□□□ 0.06
PTPN4P29074 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.42■□□□□ 0.06
PTPN4P29074 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
PTPN4P29074 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN4P29074 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN4P29074 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN4P29074 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 MBLAC2-202ENST00000514906 1936 ntBASIC15.41■□□□□ 0.06
PTPN4P29074 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.41■□□□□ 0.06
PTPN4P29074 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PTPN4P29074 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.41■□□□□ 0.06
PTPN4P29074 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN4P29074 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PTPN4P29074 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN4P29074 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN4P29074 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 AC004233.3-201ENST00000607794 1269 ntBASIC15.41■□□□□ 0.06
PTPN4P29074 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN4P29074 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN4P29074 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN4P29074 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN4P29074 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms