Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL5A3P25940 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL5A3P25940 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 AC026691.1-201ENST00000602502 2017 ntBASIC18.63■□□□□ 0.57
COL5A3P25940 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 MIR1227-201ENST00000408484 88 ntBASIC18.63■□□□□ 0.57
COL5A3P25940 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC18.63■□□□□ 0.57
COL5A3P25940 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 RN7SL277P-201ENST00000481521 288 ntBASIC18.63■□□□□ 0.57
COL5A3P25940 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC18.63■□□□□ 0.57
COL5A3P25940 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.63■□□□□ 0.57
COL5A3P25940 CR383656.3-201ENST00000551315 183 ntBASIC18.63■□□□□ 0.57
COL5A3P25940 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.63■□□□□ 0.57
COL5A3P25940 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL5A3P25940 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL5A3P25940 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC18.63■□□□□ 0.57
COL5A3P25940 AC234644.1-201ENST00000406065 370 ntBASIC18.63■□□□□ 0.57
COL5A3P25940 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL5A3P25940 MIR2392-201ENST00000584881 84 ntBASIC18.63■□□□□ 0.57
COL5A3P25940 AC138466.5-201ENST00000624002 808 ntBASIC18.63■□□□□ 0.57
COL5A3P25940 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.63■□□□□ 0.57
COL5A3P25940 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.62■□□□□ 0.57
COL5A3P25940 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL5A3P25940 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL5A3P25940 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL5A3P25940 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
COL5A3P25940 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC18.62■□□□□ 0.57
COL5A3P25940 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC18.62■□□□□ 0.57
COL5A3P25940 AC138701.2-201ENST00000553634 226 ntBASIC18.62■□□□□ 0.57
COL5A3P25940 AC007952.4-201ENST00000573866 637 ntBASIC18.62■□□□□ 0.57
COL5A3P25940 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.62■□□□□ 0.57
COL5A3P25940 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL5A3P25940 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
COL5A3P25940 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL5A3P25940 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL5A3P25940 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 WASH3P-207ENST00000560956 1394 ntBASIC18.61■□□□□ 0.57
COL5A3P25940 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.61■□□□□ 0.57
COL5A3P25940 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
COL5A3P25940 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.61■□□□□ 0.57
COL5A3P25940 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 AC073869.2-201ENST00000417338 1026 ntBASIC18.61■□□□□ 0.57
COL5A3P25940 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC18.61■□□□□ 0.57
COL5A3P25940 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
COL5A3P25940 AL157792.1-201ENST00000488281 530 ntBASIC18.61■□□□□ 0.57
COL5A3P25940 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC18.61■□□□□ 0.57
COL5A3P25940 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
COL5A3P25940 RN7SL665P-201ENST00000578793 300 ntBASIC18.61■□□□□ 0.57
COL5A3P25940 MIR3180-2-201ENST00000581748 88 ntBASIC18.61■□□□□ 0.57
COL5A3P25940 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC18.61■□□□□ 0.57
COL5A3P25940 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.61■□□□□ 0.57
COL5A3P25940 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.61■□□□□ 0.57
COL5A3P25940 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
COL5A3P25940 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 AC009093.10-201ENST00000641956 1442 ntBASIC18.61■□□□□ 0.57
COL5A3P25940 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.61■□□□□ 0.57
COL5A3P25940 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms