Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 AC148477.4-201ENST00000613430 1793 ntBASIC17.69■□□□□ 0.42
ERCC3P19447 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC3P19447 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
ERCC3P19447 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
ERCC3P19447 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC3P19447 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ERCC3P19447 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ERCC3P19447 CD8B2-202ENST00000417670 633 ntBASIC17.69■□□□□ 0.42
ERCC3P19447 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
ERCC3P19447 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC3P19447 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC3P19447 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC3P19447 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC3P19447 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC3P19447 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC3P19447 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.69■□□□□ 0.42
ERCC3P19447 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.69■□□□□ 0.42
ERCC3P19447 AC005695.3-201ENST00000614522 232 ntBASIC17.69■□□□□ 0.42
ERCC3P19447 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.69■□□□□ 0.42
ERCC3P19447 FLJ16779-201ENST00000612722 7638 ntBASIC17.69■□□□□ 0.42
ERCC3P19447 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
ERCC3P19447 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ERCC3P19447 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ERCC3P19447 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC3P19447 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC3P19447 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.68■□□□□ 0.42
ERCC3P19447 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC3P19447 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC3P19447 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ERCC3P19447 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.68■□□□□ 0.42
ERCC3P19447 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC3P19447 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
ERCC3P19447 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC3P19447 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.68■□□□□ 0.42
ERCC3P19447 AL008638.5-201ENST00000623814 1298 ntBASIC17.68■□□□□ 0.42
ERCC3P19447 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
ERCC3P19447 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
ERCC3P19447 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ERCC3P19447 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC3P19447 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
ERCC3P19447 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
ERCC3P19447 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC3P19447 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC3P19447 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.67■□□□□ 0.42
ERCC3P19447 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC3P19447 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
ERCC3P19447 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
ERCC3P19447 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC3P19447 MTX1P1-201ENST00000440904 838 ntBASIC17.67■□□□□ 0.42
ERCC3P19447 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC3P19447 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC3P19447 RPSAP36-202ENST00000494591 1261 ntBASIC17.67■□□□□ 0.42
ERCC3P19447 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC3P19447 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.67■□□□□ 0.42
ERCC3P19447 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC3P19447 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC3P19447 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms