Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.87□□□□□ -0.03
LDLRP01130 AL162274.1-201ENST00000617191 1098 ntBASIC14.87□□□□□ -0.03
LDLRP01130 IGHV3-72-202ENST00000621503 303 ntBASIC14.87□□□□□ -0.03
LDLRP01130 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LDLRP01130 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.87□□□□□ -0.03
LDLRP01130 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
LDLRP01130 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.86□□□□□ -0.03
LDLRP01130 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
LDLRP01130 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.86□□□□□ -0.03
LDLRP01130 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.86□□□□□ -0.03
LDLRP01130 ACA64.2-201ENST00000459014 129 ntBASIC14.86□□□□□ -0.03
LDLRP01130 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.86□□□□□ -0.03
LDLRP01130 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.86□□□□□ -0.03
LDLRP01130 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.86□□□□□ -0.03
LDLRP01130 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.86□□□□□ -0.03
LDLRP01130 AC007967.4-201ENST00000614700 386 ntBASIC14.86□□□□□ -0.03
LDLRP01130 MIR6805-201ENST00000615055 62 ntBASIC14.86□□□□□ -0.03
LDLRP01130 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.86□□□□□ -0.03
LDLRP01130 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.86□□□□□ -0.03
LDLRP01130 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.86□□□□□ -0.03
LDLRP01130 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LDLRP01130 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.86□□□□□ -0.03
LDLRP01130 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LDLRP01130 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.85□□□□□ -0.03
LDLRP01130 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.85□□□□□ -0.03
LDLRP01130 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LDLRP01130 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.85□□□□□ -0.03
LDLRP01130 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 AC079776.1-201ENST00000401540 1152 ntBASIC14.85□□□□□ -0.03
LDLRP01130 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.85□□□□□ -0.03
LDLRP01130 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.85□□□□□ -0.03
LDLRP01130 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.85□□□□□ -0.03
LDLRP01130 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LDLRP01130 INE1-201ENST00000456273 945 ntBASIC14.85□□□□□ -0.03
LDLRP01130 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.85□□□□□ -0.03
LDLRP01130 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.85□□□□□ -0.03
LDLRP01130 RARRES2P9-201ENST00000565168 469 ntBASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms