Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.15■□□□□ 0.5
MBD4O95243 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.15■□□□□ 0.5
MBD4O95243 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 AC126177.1-201ENST00000547829 2218 ntBASIC18.15■□□□□ 0.5
MBD4O95243 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MBD4O95243 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MBD4O95243 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MBD4O95243 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MBD4O95243 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
MBD4O95243 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
MBD4O95243 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
MBD4O95243 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.14■□□□□ 0.49
MBD4O95243 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
MBD4O95243 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
MBD4O95243 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.14■□□□□ 0.49
MBD4O95243 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC18.14■□□□□ 0.49
MBD4O95243 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.14■□□□□ 0.49
MBD4O95243 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.14■□□□□ 0.49
MBD4O95243 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MBD4O95243 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC18.14■□□□□ 0.49
MBD4O95243 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.14■□□□□ 0.49
MBD4O95243 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.14■□□□□ 0.49
MBD4O95243 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC18.14■□□□□ 0.49
MBD4O95243 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.14■□□□□ 0.49
MBD4O95243 HNRNPA1P48-202ENST00000565308 961 ntBASIC18.14■□□□□ 0.49
MBD4O95243 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.14■□□□□ 0.49
MBD4O95243 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.14■□□□□ 0.49
MBD4O95243 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
MBD4O95243 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
MBD4O95243 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 AHCYP2-201ENST00000430630 1300 ntBASIC18.14■□□□□ 0.49
MBD4O95243 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MBD4O95243 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.14■□□□□ 0.49
MBD4O95243 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.14■□□□□ 0.49
MBD4O95243 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.14■□□□□ 0.49
MBD4O95243 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MBD4O95243 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.14■□□□□ 0.49
MBD4O95243 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.13■□□□□ 0.49
MBD4O95243 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 AL354989.2-201ENST00000435838 1540 ntBASIC18.13■□□□□ 0.49
MBD4O95243 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
MBD4O95243 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.13■□□□□ 0.49
MBD4O95243 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.13■□□□□ 0.49
MBD4O95243 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MBD4O95243 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.13■□□□□ 0.49
MBD4O95243 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.13■□□□□ 0.49
MBD4O95243 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
MBD4O95243 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC18.13■□□□□ 0.49
MBD4O95243 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
MBD4O95243 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18.13■□□□□ 0.49
MBD4O95243 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.13■□□□□ 0.49
MBD4O95243 AL583810.1-201ENST00000553344 1045 ntBASIC18.13■□□□□ 0.49
MBD4O95243 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC18.13■□□□□ 0.49
MBD4O95243 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.13■□□□□ 0.49
MBD4O95243 AC009542.2-202ENST00000619004 1067 ntBASIC18.13■□□□□ 0.49
MBD4O95243 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 CLUHP2-201ENST00000426660 1303 ntBASIC18.13■□□□□ 0.49
MBD4O95243 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MBD4O95243 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC18.13■□□□□ 0.49
MBD4O95243 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.13■□□□□ 0.49
MBD4O95243 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms