Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CUX2O14529 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC25.37■■□□□ 1.65
CUX2O14529 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
CUX2O14529 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
CUX2O14529 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CUX2O14529 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
CUX2O14529 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
CUX2O14529 SNORA57-201ENST00000383870 149 ntBASIC25.37■■□□□ 1.65
CUX2O14529 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC25.37■■□□□ 1.65
CUX2O14529 AL356000.1-201ENST00000441073 1238 ntBASIC25.37■■□□□ 1.65
CUX2O14529 IGHEP2-201ENST00000519308 1256 ntBASIC25.37■■□□□ 1.65
CUX2O14529 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC25.37■■□□□ 1.65
CUX2O14529 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CUX2O14529 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CUX2O14529 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC25.37■■□□□ 1.65
CUX2O14529 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC25.37■■□□□ 1.65
CUX2O14529 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CUX2O14529 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC25.37■■□□□ 1.65
CUX2O14529 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC25.37■■□□□ 1.65
CUX2O14529 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC25.36■■□□□ 1.65
CUX2O14529 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
CUX2O14529 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
CUX2O14529 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC25.36■■□□□ 1.65
CUX2O14529 AC092570.1-201ENST00000414446 469 ntBASIC25.36■■□□□ 1.65
CUX2O14529 MDH2-205ENST00000461263 648 ntTSL 2 BASIC25.36■■□□□ 1.65
CUX2O14529 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
CUX2O14529 ALG1L3P-201ENST00000503331 765 ntBASIC25.36■■□□□ 1.65
CUX2O14529 AC026434.2-201ENST00000506094 1078 ntBASIC25.36■■□□□ 1.65
CUX2O14529 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC25.36■■□□□ 1.65
CUX2O14529 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC25.36■■□□□ 1.65
CUX2O14529 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC25.36■■□□□ 1.65
CUX2O14529 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC25.36■■□□□ 1.65
CUX2O14529 CYP4F23P-201ENST00000593402 1579 ntBASIC25.36■■□□□ 1.65
CUX2O14529 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
CUX2O14529 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
CUX2O14529 AL157407.1-201ENST00000435784 904 ntBASIC25.35■■□□□ 1.65
CUX2O14529 CSNK1G2P1-201ENST00000442675 955 ntBASIC25.35■■□□□ 1.65
CUX2O14529 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC25.35■■□□□ 1.65
CUX2O14529 AC078814.4-201ENST00000546650 327 ntBASIC25.35■■□□□ 1.65
CUX2O14529 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
CUX2O14529 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC25.35■■□□□ 1.65
CUX2O14529 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 AL137077.2-201ENST00000635124 1608 ntBASIC25.35■■□□□ 1.65
CUX2O14529 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC25.35■■□□□ 1.65
CUX2O14529 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
CUX2O14529 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CUX2O14529 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC25.35■■□□□ 1.65
CUX2O14529 FAU-201ENST00000279259 461 ntTSL 2 BASIC25.34■■□□□ 1.65
CUX2O14529 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 ERP29P1-201ENST00000442902 706 ntBASIC25.34■■□□□ 1.65
CUX2O14529 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 AC133540.1-201ENST00000620845 1019 ntBASIC25.34■■□□□ 1.65
CUX2O14529 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CUX2O14529 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC25.34■■□□□ 1.65
CUX2O14529 AC009145.4-201ENST00000625119 1294 ntBASIC25.34■■□□□ 1.65
CUX2O14529 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC25.34■■□□□ 1.65
CUX2O14529 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 AC092364.2-201ENST00000596710 2692 ntBASIC25.34■■□□□ 1.65
CUX2O14529 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC25.34■■□□□ 1.65
CUX2O14529 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
CUX2O14529 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC25.34■■□□□ 1.65
CUX2O14529 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC25.34■■□□□ 1.65
CUX2O14529 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC25.34■■□□□ 1.65
CUX2O14529 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC25.34■■□□□ 1.65
CUX2O14529 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC25.34■■□□□ 1.65
CUX2O14529 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC25.34■■□□□ 1.65
CUX2O14529 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC25.34■■□□□ 1.65
CUX2O14529 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC25.34■■□□□ 1.65
CUX2O14529 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC25.34■■□□□ 1.65
CUX2O14529 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC25.34■■□□□ 1.65
CUX2O14529 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC25.34■■□□□ 1.65
CUX2O14529 AL121949.3-201ENST00000406684 385 ntBASIC25.34■■□□□ 1.65
CUX2O14529 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CUX2O14529 KRT18P36-201ENST00000411618 1276 ntBASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms