Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.66□□□□□ -0.06
PDLIM1O00151 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 CEND1P1-201ENST00000451006 455 ntBASIC14.66□□□□□ -0.06
PDLIM1O00151 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.66□□□□□ -0.06
PDLIM1O00151 AC004967.1-201ENST00000453589 447 ntBASIC14.66□□□□□ -0.06
PDLIM1O00151 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.66□□□□□ -0.06
PDLIM1O00151 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 AC134684.3-201ENST00000641758 218 ntBASIC14.66□□□□□ -0.06
PDLIM1O00151 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.66□□□□□ -0.06
PDLIM1O00151 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.66□□□□□ -0.06
PDLIM1O00151 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
PDLIM1O00151 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PDLIM1O00151 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.65□□□□□ -0.06
PDLIM1O00151 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
PDLIM1O00151 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.65□□□□□ -0.06
PDLIM1O00151 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.65□□□□□ -0.06
PDLIM1O00151 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.65□□□□□ -0.06
PDLIM1O00151 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.65□□□□□ -0.06
PDLIM1O00151 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.65□□□□□ -0.06
PDLIM1O00151 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.65□□□□□ -0.06
PDLIM1O00151 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PDLIM1O00151 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.65□□□□□ -0.06
PDLIM1O00151 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.65□□□□□ -0.06
PDLIM1O00151 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.65□□□□□ -0.06
PDLIM1O00151 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PDLIM1O00151 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.65□□□□□ -0.06
PDLIM1O00151 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PDLIM1O00151 AKAP8P1-201ENST00000434743 1349 ntBASIC14.65□□□□□ -0.06
PDLIM1O00151 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
PDLIM1O00151 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.65□□□□□ -0.07
PDLIM1O00151 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
PDLIM1O00151 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.07
PDLIM1O00151 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PDLIM1O00151 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.64□□□□□ -0.07
PDLIM1O00151 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.64□□□□□ -0.07
PDLIM1O00151 AL671277.1-201ENST00000429656 993 ntBASIC14.64□□□□□ -0.07
PDLIM1O00151 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.64□□□□□ -0.07
PDLIM1O00151 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
PDLIM1O00151 FAM86C2P-203ENST00000528684 1004 ntBASIC14.64□□□□□ -0.07
PDLIM1O00151 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
PDLIM1O00151 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 RARRES2P8-201ENST00000566335 367 ntBASIC14.64□□□□□ -0.07
PDLIM1O00151 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PDLIM1O00151 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.64□□□□□ -0.07
PDLIM1O00151 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
PDLIM1O00151 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PDLIM1O00151 AL513210.1-201ENST00000629608 234 ntBASIC14.64□□□□□ -0.07
PDLIM1O00151 AC105339.1-204ENST00000636249 355 ntBASIC14.64□□□□□ -0.07
PDLIM1O00151 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PDLIM1O00151 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms