Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 POM121L10P-201ENST00000436994 1285 ntBASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 ACTG1P17-201ENST00000558391 1119 ntBASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 AP000593.2-201ENST00000542775 1433 ntBASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.16■□□□□ 0.18
PAAF1Q9BRP4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 AC011840.2-201ENST00000563063 1520 ntBASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 AL136309.1-201ENST00000403917 691 ntBASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 RN7SKP175-201ENST00000408472 289 ntBASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 AKR7A2P1-201ENST00000460134 915 ntBASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 MIR4783-201ENST00000580343 82 ntBASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 TMBIM7P-203ENST00000641617 1718 ntBASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PAAF1Q9BRP4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PAAF1Q9BRP4 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.18
PAAF1Q9BRP4 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PAAF1Q9BRP4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 LILRP1-201ENST00000444199 1370 ntBASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 RN7SKP230-201ENST00000365642 335 ntBASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 FNTAP2-201ENST00000430308 634 ntBASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 HIST2H2BC-201ENST00000498492 580 ntBASIC16.14■□□□□ 0.17
PAAF1Q9BRP4 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms