Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 CETN4P-206ENST00000642099 2168 ntBASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AL139400.1-201ENST00000366220 510 ntBASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 HLA-J-203ENST00000494367 1087 ntBASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AC084364.1-201ENST00000551967 1556 ntBASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 AC013726.1-201ENST00000563747 2285 ntBASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLIP4Q8N3C7 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 DNAJB3-202ENST00000449667 1266 ntBASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 MIR6069-201ENST00000620069 79 ntBASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.42□□□□□ -0.1
CLIP4Q8N3C7 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms