Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 AL596087.1-201ENST00000400979 1969 ntBASIC10.38□□□□□ -0.75
CSMD3Q7Z407 LINC01815-202ENST00000641468 1409 ntBASIC10.38□□□□□ -0.75
CSMD3Q7Z407 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC10.38□□□□□ -0.75
CSMD3Q7Z407 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AC026320.2-201ENST00000434379 478 ntBASIC10.37□□□□□ -0.75
CSMD3Q7Z407 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AC004066.1-201ENST00000502488 802 ntBASIC10.37□□□□□ -0.75
CSMD3Q7Z407 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 STK26-204ENST00000481105 1835 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 KRT18P9-201ENST00000604826 1300 ntBASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AP000358.1-201ENST00000456260 156 ntBASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 NUDT4P2-201ENST00000578341 546 ntBASIC10.37□□□□□ -0.75
CSMD3Q7Z407 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 RAN-210ENST00000541630 1475 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CSMD3Q7Z407 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 AC093909.3-201ENST00000504783 336 ntBASIC10.36□□□□□ -0.75
CSMD3Q7Z407 SIGLEC18P-201ENST00000602271 909 ntBASIC10.36□□□□□ -0.75
CSMD3Q7Z407 MIR6769A-201ENST00000617340 73 ntBASIC10.36□□□□□ -0.75
CSMD3Q7Z407 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 HLA-DQB1-202ENST00000399079 1501 ntBASIC10.36□□□□□ -0.75
CSMD3Q7Z407 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CSMD3Q7Z407 MIR648-201ENST00000385046 94 ntBASIC10.36□□□□□ -0.75
CSMD3Q7Z407 BANF1P3-201ENST00000412556 261 ntBASIC10.36□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms