Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC006001.1-201ENST00000325130 474 ntBASIC14.76□□□□□ -0.05
COL28A1Q2UY09 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 FAM197Y7-201ENST00000432892 766 ntBASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 PRKXP1-201ENST00000561423 1122 ntBASIC14.76□□□□□ -0.05
COL28A1Q2UY09 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 RN7SL555P-201ENST00000584742 339 ntBASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC018635.2-201ENST00000608625 364 ntBASIC14.76□□□□□ -0.05
COL28A1Q2UY09 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC018735.1-201ENST00000437208 1502 ntBASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AC015818.8-201ENST00000587907 1519 ntBASIC14.76□□□□□ -0.05
COL28A1Q2UY09 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL28A1Q2UY09 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 VDAC1P7-201ENST00000462417 847 ntBASIC14.75□□□□□ -0.05
COL28A1Q2UY09 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 AC078819.1-201ENST00000547454 765 ntBASIC14.75□□□□□ -0.05
COL28A1Q2UY09 AC012085.1-201ENST00000548270 765 ntBASIC14.75□□□□□ -0.05
COL28A1Q2UY09 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 MIR3147-201ENST00000577811 66 ntBASIC14.75□□□□□ -0.05
COL28A1Q2UY09 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.75□□□□□ -0.05
COL28A1Q2UY09 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms