Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.17□□□□□ -0.14
RNF4P78317 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RNF4P78317 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 AC073347.1-201ENST00000421633 2643 ntBASIC14.17□□□□□ -0.14
RNF4P78317 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 REXO1L4P-201ENST00000605109 1937 ntBASIC14.17□□□□□ -0.14
RNF4P78317 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.17□□□□□ -0.14
RNF4P78317 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.16□□□□□ -0.14
RNF4P78317 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.16□□□□□ -0.14
RNF4P78317 AC092933.1-201ENST00000393644 945 ntBASIC14.16□□□□□ -0.14
RNF4P78317 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 AC234783.1-201ENST00000441761 496 ntBASIC14.16□□□□□ -0.14
RNF4P78317 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.16□□□□□ -0.14
RNF4P78317 HILS1-202ENST00000545329 423 ntBASIC14.16□□□□□ -0.14
RNF4P78317 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RNF4P78317 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.16□□□□□ -0.14
RNF4P78317 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RNF4P78317 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
RNF4P78317 AC067930.6-201ENST00000623257 4947 ntBASIC14.16□□□□□ -0.14
RNF4P78317 KRT8P14-201ENST00000414254 1442 ntBASIC14.15□□□□□ -0.14
RNF4P78317 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.15□□□□□ -0.14
RNF4P78317 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.15□□□□□ -0.14
RNF4P78317 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.15□□□□□ -0.14
RNF4P78317 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 AC138035.3-201ENST00000622706 2791 ntBASIC14.15□□□□□ -0.14
RNF4P78317 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
RNF4P78317 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.15□□□□□ -0.14
RNF4P78317 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.15□□□□□ -0.14
RNF4P78317 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 CROCCP4-201ENST00000457096 498 ntBASIC14.15□□□□□ -0.14
RNF4P78317 ACA64.2-201ENST00000459014 129 ntBASIC14.15□□□□□ -0.14
RNF4P78317 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.15□□□□□ -0.14
RNF4P78317 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms