Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.59■□□□□ 0.41
CTCFP49711 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.59■□□□□ 0.41
CTCFP49711 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 LINC01144-201ENST00000626198 1710 ntBASIC17.59■□□□□ 0.41
CTCFP49711 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 AC090502.4-201ENST00000551714 1386 ntBASIC17.59■□□□□ 0.41
CTCFP49711 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CTCFP49711 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.59■□□□□ 0.41
CTCFP49711 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.59■□□□□ 0.41
CTCFP49711 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.59■□□□□ 0.41
CTCFP49711 GCSHP3-201ENST00000431120 391 ntBASIC17.59■□□□□ 0.41
CTCFP49711 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC17.59■□□□□ 0.41
CTCFP49711 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 FAM86B3P-203ENST00000523992 854 ntBASIC17.59■□□□□ 0.41
CTCFP49711 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.59■□□□□ 0.41
CTCFP49711 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.59■□□□□ 0.41
CTCFP49711 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC17.59■□□□□ 0.41
CTCFP49711 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
CTCFP49711 AL627230.2-201ENST00000613254 655 ntBASIC17.59■□□□□ 0.41
CTCFP49711 AC010503.4-201ENST00000615487 688 ntBASIC17.59■□□□□ 0.41
CTCFP49711 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CTCFP49711 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.59■□□□□ 0.41
CTCFP49711 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CTCFP49711 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
CTCFP49711 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CTCFP49711 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.58■□□□□ 0.41
CTCFP49711 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CTCFP49711 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CTCFP49711 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CTCFP49711 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.58■□□□□ 0.41
CTCFP49711 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
CTCFP49711 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.58■□□□□ 0.41
CTCFP49711 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CTCFP49711 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.58■□□□□ 0.4
CTCFP49711 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 AC026320.2-201ENST00000434379 478 ntBASIC17.58■□□□□ 0.4
CTCFP49711 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC17.58■□□□□ 0.4
CTCFP49711 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CTCFP49711 AC084752.1-201ENST00000509766 622 ntBASIC17.58■□□□□ 0.4
CTCFP49711 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC17.58■□□□□ 0.4
CTCFP49711 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC17.58■□□□□ 0.4
CTCFP49711 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC17.58■□□□□ 0.4
CTCFP49711 AC009779.1-201ENST00000551138 283 ntBASIC17.58■□□□□ 0.4
CTCFP49711 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 MIR3677-201ENST00000578964 60 ntBASIC17.58■□□□□ 0.4
CTCFP49711 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
CTCFP49711 AC107464.3-201ENST00000609172 737 ntBASIC17.58■□□□□ 0.4
CTCFP49711 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CTCFP49711 AC002472.4-201ENST00000641915 272 ntBASIC17.58■□□□□ 0.4
CTCFP49711 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.58■□□□□ 0.4
CTCFP49711 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CTCFP49711 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CTCFP49711 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 HLA-A-202ENST00000376806 1854 ntBASIC17.58■□□□□ 0.4
CTCFP49711 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CTCFP49711 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CTCFP49711 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CTCFP49711 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CTCFP49711 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CTCFP49711 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CTCFP49711 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CTCFP49711 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms