Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
PTPN9P43378 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.86■□□□□ 0.13
PTPN9P43378 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.86■□□□□ 0.13
PTPN9P43378 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 CICP23-201ENST00000605013 2741 ntBASIC15.86■□□□□ 0.13
PTPN9P43378 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
PTPN9P43378 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.85■□□□□ 0.13
PTPN9P43378 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 GIMAP3P-201ENST00000495150 836 ntBASIC15.85■□□□□ 0.13
PTPN9P43378 KRT18P25-201ENST00000508931 1278 ntBASIC15.85■□□□□ 0.13
PTPN9P43378 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.85■□□□□ 0.13
PTPN9P43378 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.85■□□□□ 0.13
PTPN9P43378 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.85■□□□□ 0.13
PTPN9P43378 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTPN9P43378 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.85■□□□□ 0.13
PTPN9P43378 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.84■□□□□ 0.13
PTPN9P43378 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
PTPN9P43378 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
PTPN9P43378 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
PTPN9P43378 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.84■□□□□ 0.13
PTPN9P43378 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.84■□□□□ 0.13
PTPN9P43378 EIF3FP3-201ENST00000434851 1086 ntBASIC15.84■□□□□ 0.13
PTPN9P43378 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.84■□□□□ 0.13
PTPN9P43378 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.84■□□□□ 0.13
PTPN9P43378 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.84■□□□□ 0.13
PTPN9P43378 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.84■□□□□ 0.13
PTPN9P43378 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.84■□□□□ 0.13
PTPN9P43378 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.84■□□□□ 0.13
PTPN9P43378 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.84■□□□□ 0.13
PTPN9P43378 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.84■□□□□ 0.13
PTPN9P43378 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTPN9P43378 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTPN9P43378 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
PTPN9P43378 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTPN9P43378 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTPN9P43378 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.83■□□□□ 0.13
PTPN9P43378 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTPN9P43378 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.83■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms