Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 Z69890.1-201ENST00000382990 339 ntBASIC17.83■□□□□ 0.45
COL4A5P29400 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A5P29400 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A5P29400 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC17.83■□□□□ 0.45
COL4A5P29400 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC17.83■□□□□ 0.45
COL4A5P29400 NSD1-211ENST00000511258 809 ntTSL 3 BASIC17.83■□□□□ 0.45
COL4A5P29400 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.83■□□□□ 0.45
COL4A5P29400 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC17.83■□□□□ 0.45
COL4A5P29400 DNM1P51-201ENST00000558149 522 ntBASIC17.83■□□□□ 0.45
COL4A5P29400 AL118516.1-201ENST00000564152 670 ntBASIC17.83■□□□□ 0.45
COL4A5P29400 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC17.83■□□□□ 0.45
COL4A5P29400 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A5P29400 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A5P29400 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC17.83■□□□□ 0.45
COL4A5P29400 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.83■□□□□ 0.45
COL4A5P29400 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A5P29400 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
COL4A5P29400 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
COL4A5P29400 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A5P29400 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.83■□□□□ 0.44
COL4A5P29400 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.83■□□□□ 0.44
COL4A5P29400 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.83■□□□□ 0.44
COL4A5P29400 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.83■□□□□ 0.44
COL4A5P29400 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
COL4A5P29400 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC17.83■□□□□ 0.44
COL4A5P29400 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC17.83■□□□□ 0.44
COL4A5P29400 AC003686.1-201ENST00000550956 1034 ntBASIC17.83■□□□□ 0.44
COL4A5P29400 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17.83■□□□□ 0.44
COL4A5P29400 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC17.83■□□□□ 0.44
COL4A5P29400 AC138466.4-201ENST00000623965 852 ntBASIC17.83■□□□□ 0.44
COL4A5P29400 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A5P29400 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A5P29400 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.82■□□□□ 0.44
COL4A5P29400 KRT8P28-201ENST00000433288 1390 ntBASIC17.82■□□□□ 0.44
COL4A5P29400 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
COL4A5P29400 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A5P29400 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC17.82■□□□□ 0.44
COL4A5P29400 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A5P29400 CD164-210ENST00000512821 964 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A5P29400 AC114947.1-202ENST00000514136 344 ntBASIC17.82■□□□□ 0.44
COL4A5P29400 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.82■□□□□ 0.44
COL4A5P29400 RN7SL596P-201ENST00000582123 288 ntBASIC17.82■□□□□ 0.44
COL4A5P29400 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC17.82■□□□□ 0.44
COL4A5P29400 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC17.82■□□□□ 0.44
COL4A5P29400 AC244250.3-201ENST00000620749 366 ntBASIC17.82■□□□□ 0.44
COL4A5P29400 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.82■□□□□ 0.44
COL4A5P29400 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.82■□□□□ 0.44
COL4A5P29400 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A5P29400 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 STK16-203ENST00000409516 895 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A5P29400 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.81■□□□□ 0.44
COL4A5P29400 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 AC007952.4-201ENST00000573866 637 ntBASIC17.81■□□□□ 0.44
COL4A5P29400 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A5P29400 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A5P29400 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A5P29400 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A5P29400 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A5P29400 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A5P29400 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms