Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.04□□□□□ -0.16
MSX1P28360 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 AL162726.2-201ENST00000438986 1017 ntBASIC14.04□□□□□ -0.16
MSX1P28360 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.04□□□□□ -0.16
MSX1P28360 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 AL109954.1-202ENST00000564051 2148 ntBASIC14.04□□□□□ -0.16
MSX1P28360 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.04□□□□□ -0.16
MSX1P28360 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 BTNL10-201ENST00000595971 695 ntBASIC14.04□□□□□ -0.16
MSX1P28360 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.04□□□□□ -0.16
MSX1P28360 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 KRT8P22-201ENST00000562317 1415 ntBASIC14.04□□□□□ -0.16
MSX1P28360 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 AC012508.2-201ENST00000567613 1472 ntBASIC14.04□□□□□ -0.16
MSX1P28360 MGA-212ENST00000619521 1496 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.04□□□□□ -0.16
MSX1P28360 PCDHA3-202ENST00000532566 4594 ntBASIC14.04□□□□□ -0.16
MSX1P28360 REXO1L6P-201ENST00000603433 1515 ntBASIC14.04□□□□□ -0.16
MSX1P28360 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 AC092384.3-202ENST00000564646 2873 ntBASIC14.04□□□□□ -0.16
MSX1P28360 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
MSX1P28360 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
MSX1P28360 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 AC126177.1-201ENST00000547829 2218 ntBASIC14.03□□□□□ -0.16
MSX1P28360 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
MSX1P28360 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
MSX1P28360 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 AC010740.1-201ENST00000417035 684 ntBASIC14.03□□□□□ -0.16
MSX1P28360 CROCCP4-201ENST00000457096 498 ntBASIC14.03□□□□□ -0.16
MSX1P28360 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.03□□□□□ -0.16
MSX1P28360 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.03□□□□□ -0.16
MSX1P28360 USP32P1-208ENST00000506594 1164 ntBASIC14.03□□□□□ -0.16
MSX1P28360 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.03□□□□□ -0.16
MSX1P28360 AL359711.2-201ENST00000563105 872 ntBASIC14.03□□□□□ -0.16
MSX1P28360 AC124283.3-201ENST00000570869 594 ntBASIC14.03□□□□□ -0.16
MSX1P28360 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.03□□□□□ -0.16
MSX1P28360 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
MSX1P28360 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.03□□□□□ -0.16
MSX1P28360 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.03□□□□□ -0.16
MSX1P28360 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
MSX1P28360 MROH4P-201ENST00000431302 1578 ntBASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms