Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 FLJ16779-201ENST00000612722 7638 ntBASIC16.09■□□□□ 0.17
BDNFP23560 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
BDNFP23560 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.09■□□□□ 0.17
BDNFP23560 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.09■□□□□ 0.17
BDNFP23560 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 RNA5SP486-201ENST00000515961 83 ntBASIC16.09■□□□□ 0.17
BDNFP23560 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.09■□□□□ 0.17
BDNFP23560 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 AC079316.1-201ENST00000548397 411 ntBASIC16.09■□□□□ 0.17
BDNFP23560 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.09■□□□□ 0.17
BDNFP23560 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.09■□□□□ 0.17
BDNFP23560 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.09■□□□□ 0.17
BDNFP23560 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 AC012508.2-201ENST00000567613 1472 ntBASIC16.09■□□□□ 0.17
BDNFP23560 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
BDNFP23560 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
BDNFP23560 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
BDNFP23560 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
BDNFP23560 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
BDNFP23560 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
BDNFP23560 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
BDNFP23560 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
BDNFP23560 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.08■□□□□ 0.16
BDNFP23560 AC006001.1-201ENST00000325130 474 ntBASIC16.08■□□□□ 0.16
BDNFP23560 TPM3P8-201ENST00000330554 643 ntBASIC16.08■□□□□ 0.16
BDNFP23560 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.08■□□□□ 0.16
BDNFP23560 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.08■□□□□ 0.16
BDNFP23560 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.08■□□□□ 0.16
BDNFP23560 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.08■□□□□ 0.16
BDNFP23560 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
BDNFP23560 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 RN7SL48P-201ENST00000579283 293 ntBASIC16.08■□□□□ 0.16
BDNFP23560 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.08■□□□□ 0.16
BDNFP23560 AL033527.4-201ENST00000641026 673 ntBASIC16.08■□□□□ 0.16
BDNFP23560 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.08■□□□□ 0.16
BDNFP23560 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.08■□□□□ 0.16
BDNFP23560 AC126365.1-201ENST00000578585 1514 ntBASIC16.08■□□□□ 0.16
BDNFP23560 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 AC055811.4-201ENST00000624039 1754 ntBASIC16.08■□□□□ 0.16
BDNFP23560 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
BDNFP23560 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
BDNFP23560 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
BDNFP23560 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
BDNFP23560 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.07■□□□□ 0.16
BDNFP23560 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.07■□□□□ 0.16
BDNFP23560 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BDNFP23560 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.07■□□□□ 0.16
BDNFP23560 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms