Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.26■□□□□ 0.03
MSH3P20585 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 RN7SL752P-201ENST00000463779 287 ntBASIC15.26■□□□□ 0.03
MSH3P20585 RN7SL692P-201ENST00000464677 288 ntBASIC15.26■□□□□ 0.03
MSH3P20585 GAPDHP40-201ENST00000505218 1006 ntBASIC15.26■□□□□ 0.03
MSH3P20585 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.26■□□□□ 0.03
MSH3P20585 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 AC097376.2-205ENST00000610159 5334 ntBASIC15.26■□□□□ 0.03
MSH3P20585 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
MSH3P20585 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
MSH3P20585 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 KRT8P22-201ENST00000562317 1415 ntBASIC15.26■□□□□ 0.03
MSH3P20585 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSH3P20585 AL138799.1-201ENST00000448213 1675 ntBASIC15.25■□□□□ 0.03
MSH3P20585 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
MSH3P20585 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
MSH3P20585 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.25■□□□□ 0.03
MSH3P20585 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 AL162726.2-201ENST00000438986 1017 ntBASIC15.25■□□□□ 0.03
MSH3P20585 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.25■□□□□ 0.03
MSH3P20585 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.25■□□□□ 0.03
MSH3P20585 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 AC011495.1-201ENST00000498085 584 ntBASIC15.25■□□□□ 0.03
MSH3P20585 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.25■□□□□ 0.03
MSH3P20585 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.25■□□□□ 0.03
MSH3P20585 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
MSH3P20585 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
MSH3P20585 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.25■□□□□ 0.03
MSH3P20585 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.25■□□□□ 0.03
MSH3P20585 AC124283.3-201ENST00000570869 594 ntBASIC15.25■□□□□ 0.03
MSH3P20585 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
MSH3P20585 CU634019.7-201ENST00000624153 1185 ntBASIC15.25■□□□□ 0.03
MSH3P20585 FP236241.2-201ENST00000624906 1185 ntBASIC15.25■□□□□ 0.03
MSH3P20585 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.25■□□□□ 0.03
MSH3P20585 AL033527.5-201ENST00000641382 801 ntBASIC15.25■□□□□ 0.03
MSH3P20585 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.25■□□□□ 0.03
MSH3P20585 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.25■□□□□ 0.03
MSH3P20585 AC023024.2-201ENST00000623561 1993 ntBASIC15.25■□□□□ 0.03
MSH3P20585 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MSH3P20585 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.25■□□□□ 0.03
MSH3P20585 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.24■□□□□ 0.03
MSH3P20585 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
MSH3P20585 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.24■□□□□ 0.03
MSH3P20585 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
MSH3P20585 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
MSH3P20585 TCAF2P1-201ENST00000291129 2421 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms