Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.31■□□□□ 0.04
XRCC1P18887 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
XRCC1P18887 MIR4313-201ENST00000580760 101 ntBASIC15.31■□□□□ 0.04
XRCC1P18887 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
XRCC1P18887 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
XRCC1P18887 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
XRCC1P18887 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.31■□□□□ 0.04
XRCC1P18887 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
XRCC1P18887 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.31■□□□□ 0.04
XRCC1P18887 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.31■□□□□ 0.04
XRCC1P18887 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.3■□□□□ 0.04
XRCC1P18887 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.3■□□□□ 0.04
XRCC1P18887 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
XRCC1P18887 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.3■□□□□ 0.04
XRCC1P18887 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.3■□□□□ 0.04
XRCC1P18887 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.3■□□□□ 0.04
XRCC1P18887 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
XRCC1P18887 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
XRCC1P18887 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
XRCC1P18887 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
XRCC1P18887 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
XRCC1P18887 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
XRCC1P18887 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
XRCC1P18887 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
XRCC1P18887 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.29■□□□□ 0.04
XRCC1P18887 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
XRCC1P18887 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
XRCC1P18887 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms