Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 AL391280.1-201ENST00000506969 1062 ntBASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 IGHV3-37-201ENST00000518544 340 ntBASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 DNM1P30-201ENST00000563586 452 ntBASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 AC005324.6-201ENST00000587972 613 ntBASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC28.71■■■□□ 2.19
SHROOM4Q9ULL8 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC28.7■■■□□ 2.19
SHROOM4Q9ULL8 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SHROOM4Q9ULL8 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC28.7■■■□□ 2.19
SHROOM4Q9ULL8 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.19
SHROOM4Q9ULL8 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC28.7■■■□□ 2.19
SHROOM4Q9ULL8 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 AC055811.4-201ENST00000624039 1754 ntBASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 LSM5-207ENST00000410044 687 ntTSL 3 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 DNAJB1P1-201ENST00000429417 1024 ntBASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SHROOM4Q9ULL8 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 OR10B1P-201ENST00000601666 907 ntBASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 AL805961.1-201ENST00000642026 753 ntBASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC28.69■■■□□ 2.18
SHROOM4Q9ULL8 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 RPS15-201ENST00000233609 534 ntTSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 AL645937.2-201ENST00000396808 931 ntBASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 AC100850.1-201ENST00000506768 649 ntBASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 RPS15-205ENST00000586686 562 ntTSL 5 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 RPS15-208ENST00000591804 711 ntTSL 5 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 AP001065.2-201ENST00000617205 644 ntBASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC28.68■■■□□ 2.18
SHROOM4Q9ULL8 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHROOM4Q9ULL8 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms