Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
IFT140Q96RY7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
IFT140Q96RY7 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
IFT140Q96RY7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
IFT140Q96RY7 HLA-DPA2-205ENST00000433582 733 ntBASIC24.47■■□□□ 1.51
IFT140Q96RY7 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 RN7SL582P-201ENST00000491078 279 ntBASIC24.47■■□□□ 1.51
IFT140Q96RY7 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 TREHP1-201ENST00000531328 465 ntBASIC24.47■■□□□ 1.51
IFT140Q96RY7 MBP-238ENST00000580402 915 ntTSL 5 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
IFT140Q96RY7 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 AC023090.2-201ENST00000625182 2110 ntBASIC24.47■■□□□ 1.51
IFT140Q96RY7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
IFT140Q96RY7 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
IFT140Q96RY7 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
IFT140Q96RY7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
IFT140Q96RY7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
IFT140Q96RY7 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
IFT140Q96RY7 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC24.46■■□□□ 1.51
IFT140Q96RY7 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC24.46■■□□□ 1.51
IFT140Q96RY7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
IFT140Q96RY7 LILRP1-201ENST00000444199 1370 ntBASIC24.46■■□□□ 1.51
IFT140Q96RY7 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
IFT140Q96RY7 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
IFT140Q96RY7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC24.46■■□□□ 1.51
IFT140Q96RY7 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC24.46■■□□□ 1.51
IFT140Q96RY7 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
IFT140Q96RY7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
IFT140Q96RY7 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
IFT140Q96RY7 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.51
IFT140Q96RY7 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC24.45■■□□□ 1.51
IFT140Q96RY7 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
IFT140Q96RY7 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
IFT140Q96RY7 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC24.45■■□□□ 1.51
IFT140Q96RY7 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC24.45■■□□□ 1.51
IFT140Q96RY7 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC24.45■■□□□ 1.51
IFT140Q96RY7 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
IFT140Q96RY7 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
IFT140Q96RY7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
IFT140Q96RY7 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
IFT140Q96RY7 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
IFT140Q96RY7 AC006372.4-201ENST00000624122 1543 ntBASIC24.45■■□□□ 1.5
IFT140Q96RY7 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 STK33-217ENST00000534493 1895 ntTSL 2 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
IFT140Q96RY7 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 AF274858.1-201ENST00000406288 372 ntBASIC24.45■■□□□ 1.5
IFT140Q96RY7 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC24.45■■□□□ 1.5
IFT140Q96RY7 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
IFT140Q96RY7 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
IFT140Q96RY7 AC011676.5-201ENST00000624864 2660 ntBASIC24.44■■□□□ 1.5
IFT140Q96RY7 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
IFT140Q96RY7 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
IFT140Q96RY7 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 REXO1L2P-201ENST00000425429 2069 ntBASIC24.44■■□□□ 1.5
IFT140Q96RY7 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 MT2A-202ENST00000561491 581 ntTSL 2 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 ELP5-212ENST00000574255 671 ntTSL 2 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 ST5-261ENST00000626808 1071 ntTSL 5 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
IFT140Q96RY7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
IFT140Q96RY7 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
IFT140Q96RY7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
IFT140Q96RY7 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
IFT140Q96RY7 CICP11-201ENST00000434745 2827 ntBASIC24.43■■□□□ 1.5
IFT140Q96RY7 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
IFT140Q96RY7 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 AC013726.1-201ENST00000563747 2285 ntBASIC24.43■■□□□ 1.5
IFT140Q96RY7 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
IFT140Q96RY7 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
IFT140Q96RY7 RNVU1-8-201ENST00000364272 125 ntBASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms