Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AL512384.1-201ENST00000406683 331 ntBASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AC243562.1-201ENST00000560672 389 ntBASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 MIR6080-201ENST00000617359 66 ntBASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 C18orf15-201ENST00000623680 2534 ntBASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AL691432.1-201ENST00000596308 1422 ntBASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 SPDYE14P-201ENST00000442619 822 ntBASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 IGHV3-62-201ENST00000520057 340 ntBASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 RPL28-206ENST00000558752 671 ntTSL 3 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AC140912.1-201ENST00000577171 1054 ntBASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 AL161645.1-201ENST00000622716 1255 ntBASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 PFAS-212ENST00000625942 396 ntTSL 5 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
PDLIM3Q53GG5 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms