Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.83□□□□□ -0.19
SUMO3P55854 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SUMO3P55854 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SUMO3P55854 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
SUMO3P55854 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
SUMO3P55854 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SUMO3P55854 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SUMO3P55854 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
SUMO3P55854 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
SUMO3P55854 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
SUMO3P55854 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.83□□□□□ -0.2
SUMO3P55854 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 BAATP1-201ENST00000412284 1225 ntBASIC13.83□□□□□ -0.2
SUMO3P55854 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.83□□□□□ -0.2
SUMO3P55854 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.83□□□□□ -0.2
SUMO3P55854 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.83□□□□□ -0.2
SUMO3P55854 AC068587.3-201ENST00000526613 355 ntBASIC13.83□□□□□ -0.2
SUMO3P55854 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.83□□□□□ -0.2
SUMO3P55854 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SUMO3P55854 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.83□□□□□ -0.2
SUMO3P55854 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SUMO3P55854 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.83□□□□□ -0.2
SUMO3P55854 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.83□□□□□ -0.2
SUMO3P55854 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
SUMO3P55854 REXO1L5P-201ENST00000622260 2098 ntBASIC13.83□□□□□ -0.2
SUMO3P55854 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SUMO3P55854 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.82□□□□□ -0.2
SUMO3P55854 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 LINC01101-201ENST00000622953 1884 ntBASIC13.82□□□□□ -0.2
SUMO3P55854 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.82□□□□□ -0.2
SUMO3P55854 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 AL157414.3-201ENST00000624276 1954 ntBASIC13.82□□□□□ -0.2
SUMO3P55854 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.82□□□□□ -0.2
SUMO3P55854 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
SUMO3P55854 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.82□□□□□ -0.2
SUMO3P55854 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 RN7SL837P-201ENST00000463010 287 ntBASIC13.82□□□□□ -0.2
SUMO3P55854 TDH-203ENST00000531764 1110 ntBASIC13.82□□□□□ -0.2
SUMO3P55854 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.82□□□□□ -0.2
SUMO3P55854 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.82□□□□□ -0.2
SUMO3P55854 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SUMO3P55854 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
SUMO3P55854 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.82□□□□□ -0.2
SUMO3P55854 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
SUMO3P55854 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms