Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC15.97■□□□□ 0.15
COL4A4P53420 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC15.97■□□□□ 0.15
COL4A4P53420 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.97■□□□□ 0.15
COL4A4P53420 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
COL4A4P53420 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC15.97■□□□□ 0.15
COL4A4P53420 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.97■□□□□ 0.15
COL4A4P53420 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC15.97■□□□□ 0.15
COL4A4P53420 AC005632.3-201ENST00000605544 308 ntBASIC15.97■□□□□ 0.15
COL4A4P53420 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
COL4A4P53420 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC15.97■□□□□ 0.15
COL4A4P53420 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.97■□□□□ 0.15
COL4A4P53420 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
COL4A4P53420 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
COL4A4P53420 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
COL4A4P53420 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.97■□□□□ 0.15
COL4A4P53420 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
COL4A4P53420 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL4A4P53420 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
COL4A4P53420 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.96■□□□□ 0.15
COL4A4P53420 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 MIR6842-201ENST00000612539 65 ntBASIC15.96■□□□□ 0.15
COL4A4P53420 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.96■□□□□ 0.15
COL4A4P53420 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL4A4P53420 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.96■□□□□ 0.15
COL4A4P53420 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL4A4P53420 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
COL4A4P53420 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL4A4P53420 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL4A4P53420 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.96■□□□□ 0.14
COL4A4P53420 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 KRT18P36-201ENST00000411618 1276 ntBASIC15.95■□□□□ 0.14
COL4A4P53420 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.95■□□□□ 0.14
COL4A4P53420 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
COL4A4P53420 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.95■□□□□ 0.14
COL4A4P53420 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
COL4A4P53420 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 KLF2P1-201ENST00000447438 1042 ntBASIC15.95■□□□□ 0.14
COL4A4P53420 AC010234.1-201ENST00000494599 870 ntBASIC15.95■□□□□ 0.14
COL4A4P53420 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.95■□□□□ 0.14
COL4A4P53420 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.95■□□□□ 0.14
COL4A4P53420 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC15.95■□□□□ 0.14
COL4A4P53420 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.95■□□□□ 0.14
COL4A4P53420 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.95■□□□□ 0.14
COL4A4P53420 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL4A4P53420 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL4A4P53420 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms