Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 AL137783.1-201ENST00000623494 1896 ntBASIC15.88■□□□□ 0.13
PTPN9P43378 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.88■□□□□ 0.13
PTPN9P43378 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.88■□□□□ 0.13
PTPN9P43378 AC098614.1-201ENST00000368528 745 ntBASIC15.88■□□□□ 0.13
PTPN9P43378 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PTPN9P43378 ACTBP8-201ENST00000403258 1108 ntBASIC15.88■□□□□ 0.13
PTPN9P43378 AP006294.1-201ENST00000415407 339 ntBASIC15.88■□□□□ 0.13
PTPN9P43378 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.88■□□□□ 0.13
PTPN9P43378 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 AC022137.2-201ENST00000503482 481 ntBASIC15.88■□□□□ 0.13
PTPN9P43378 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.88■□□□□ 0.13
PTPN9P43378 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.88■□□□□ 0.13
PTPN9P43378 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 AC009486.1-201ENST00000569860 813 ntBASIC15.88■□□□□ 0.13
PTPN9P43378 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.88■□□□□ 0.13
PTPN9P43378 RPSAP52-203ENST00000622976 1023 ntBASIC15.88■□□□□ 0.13
PTPN9P43378 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.88■□□□□ 0.13
PTPN9P43378 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.88■□□□□ 0.13
PTPN9P43378 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN9P43378 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN9P43378 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.87■□□□□ 0.13
PTPN9P43378 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTPN9P43378 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN9P43378 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN9P43378 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.87■□□□□ 0.13
PTPN9P43378 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN9P43378 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 AC093433.1-201ENST00000458048 571 ntBASIC15.87■□□□□ 0.13
PTPN9P43378 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 AC022616.1-201ENST00000518688 554 ntBASIC15.87■□□□□ 0.13
PTPN9P43378 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.87■□□□□ 0.13
PTPN9P43378 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.87■□□□□ 0.13
PTPN9P43378 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTPN9P43378 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
PTPN9P43378 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 CICP24-201ENST00000605464 2705 ntBASIC15.87■□□□□ 0.13
PTPN9P43378 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTPN9P43378 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.87■□□□□ 0.13
PTPN9P43378 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
PTPN9P43378 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
PTPN9P43378 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 LINC02228-204ENST00000642115 2962 ntBASIC15.86■□□□□ 0.13
PTPN9P43378 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
PTPN9P43378 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTPN9P43378 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.86■□□□□ 0.13
PTPN9P43378 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
PTPN9P43378 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
PTPN9P43378 ACTG1P3-201ENST00000431775 1114 ntBASIC15.86■□□□□ 0.13
PTPN9P43378 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms