Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MIR658-201ENST00000385210 100 ntBASIC17.16■□□□□ 0.34
CIITAP33076 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CIITAP33076 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.16■□□□□ 0.34
CIITAP33076 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.16■□□□□ 0.34
CIITAP33076 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.16■□□□□ 0.34
CIITAP33076 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.16■□□□□ 0.34
CIITAP33076 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CIITAP33076 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.16■□□□□ 0.34
CIITAP33076 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.16■□□□□ 0.34
CIITAP33076 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
CIITAP33076 AC006453.4-201ENST00000636949 1252 ntBASIC17.16■□□□□ 0.34
CIITAP33076 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.16■□□□□ 0.34
CIITAP33076 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CIITAP33076 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.16■□□□□ 0.34
CIITAP33076 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CIITAP33076 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.16■□□□□ 0.34
CIITAP33076 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CIITAP33076 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.15■□□□□ 0.34
CIITAP33076 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.15■□□□□ 0.34
CIITAP33076 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 ACE3P-201ENST00000423435 1973 ntBASIC17.15■□□□□ 0.34
CIITAP33076 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CIITAP33076 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CIITAP33076 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.15■□□□□ 0.34
CIITAP33076 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CIITAP33076 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.15■□□□□ 0.34
CIITAP33076 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CIITAP33076 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.15■□□□□ 0.34
CIITAP33076 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 MESTP3-201ENST00000503460 968 ntBASIC17.15■□□□□ 0.34
CIITAP33076 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.15■□□□□ 0.34
CIITAP33076 AC079316.1-201ENST00000548397 411 ntBASIC17.15■□□□□ 0.34
CIITAP33076 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.15■□□□□ 0.34
CIITAP33076 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CIITAP33076 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.15■□□□□ 0.34
CIITAP33076 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CIITAP33076 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.15■□□□□ 0.34
CIITAP33076 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CIITAP33076 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.15■□□□□ 0.34
CIITAP33076 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CIITAP33076 HYMAI-201ENST00000635591 3347 ntBASIC17.14■□□□□ 0.34
CIITAP33076 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.14■□□□□ 0.34
CIITAP33076 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.14■□□□□ 0.33
CIITAP33076 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CIITAP33076 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CIITAP33076 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.14■□□□□ 0.33
CIITAP33076 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.14■□□□□ 0.33
CIITAP33076 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CIITAP33076 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 TPM3P8-201ENST00000330554 643 ntBASIC17.14■□□□□ 0.33
CIITAP33076 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.14■□□□□ 0.33
CIITAP33076 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.14■□□□□ 0.33
CIITAP33076 AC099336.1-201ENST00000417053 1171 ntBASIC17.14■□□□□ 0.33
CIITAP33076 AC026954.1-201ENST00000429771 1293 ntBASIC17.14■□□□□ 0.33
CIITAP33076 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CIITAP33076 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 AL590640.2-201ENST00000457038 527 ntBASIC17.14■□□□□ 0.33
CIITAP33076 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 ECM1P1-201ENST00000604092 1279 ntBASIC17.14■□□□□ 0.33
CIITAP33076 AC133552.6-201ENST00000613406 534 ntBASIC17.14■□□□□ 0.33
CIITAP33076 AC008687.7-202ENST00000637404 953 ntBASIC17.14■□□□□ 0.33
CIITAP33076 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CIITAP33076 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms